Avner P, Coen D, Dujon B, Slonimski PP (1973) Mitochondrial Genetics. IV. Allelism and mapping studies of oligomycin resistant mutants in S. cerevisiae. Mol Gen Genet 125:9-52

Barrell BG, Bankier AT, Drouin J (1979) A different genetic code in human mitochondria. Nature 282:189-194

Beifort M (2003) Two for the price of one: a bifunctional intron-encoded DNA endonucle-

ase-RNA maturase. Genes Dev 17:2860-2863 Bell-Pedersen D, Quirk SM, BrykM, Beifort M (1991) I-Tevl,the endonuclease encodedby the mobile td intron, recognizes binding and cleavage domains on its DNA target. Proc Natl Acad Sei USA 88:7719-7723 Bolotin M, Coen D, Deutsch J, Dujon B, Netter P, Petrochilo E, Slonimski PP (1971) La recombinaison des mitochondries chez Saccharomyces cerevisiae. Bull Inst Pasteur Paris 69:215-239

Bonitz SG, Berlani R, Coruzzi G, Li M, Macino G, Nobrega F G, Nobrega MP, Thalenfeld BE, Tzagoloff A (1980) Codon recognition rules in yeast mitochondria. Proc Natl Acad Sei USA 77:3167-3170

Bos JL, Heyting C, Borst P (1978) An insert in the single gene for the large ribosomal RNA

in yeast mitochondrial DNA. Nature 275:336-338 Boynton JE, Harris EH, Burkhart BB, Lamerson PM, Gilham NW, (1987) Transmission of mitochondrial and chloroplast genome in crosses of Chlamydomonas. Proc Natl Acad Sei USA 84:2391-2395

Choulika A, Perrin A, Dujon B, Nicolas J-F (1994) The yeast I-Scel meganuclease induces site-directed chromosomal recombination in mammalian cells. CR Acad Sei Paris 317:1013-1019

Choulika A, Perrin A, Dujon B, Nicolas J-F (1995) Induction of homologous recombination in mammalian chromosomes by using the I-Scel system of Saccharomyces cerevisiae. Mol Cell Biol 15:1968-1973 Church GM, Slonimski PP, Gilbert W (1979) Pleiotropic mutations within two yeast mitochondrial cytochrome genes block mRNA processing. Cell 18:1209-1215 Coen D, Deutsch J, Netter P, Petrochilo E, Slonimski PP (1970) Mitochondrial genetics in yeast. I. Methodology and phenomenology. Symp Soc Exp Biol 24. Cambridge Univ Press, Cambridge, pp 449-496 Colleaux L, d'Auriol L, Betermier M, Cottarel G, Jacquier A, Galibert F, Dujon B (1986) Universal code equivalent of a yeast mitochondrial intron reading frame is expressed into E. coli as a specific double strand endonuclease. Cell 44:521-533 Colleaux L, d'Auriol L, Galibert F, Dujon B (1988) Recognition and cleavage site of the intron encoded omega transposase. Proc Natl Acad Sei USA 85:6022-6026 Colleaux L, Rougeulle P, Avner P, Dujon B (1993) Rapid physical mapping of YAC inserts by random integration of I-Scel sites. Hum Mol Genet 2:265-271 Davies RW, Waring RB, Ray JA, Brown TA, Scazzocchio C (1982) Making ends meet: a model for RNA splicing in fungal mitochondria. Nature 300:719-724 Delahodde A, Goguel V, Becam AM,Creusot F, Perea J, Banroques J, Jacq C (1989) Site-specific DNA endonuclease and RNA maturase activities of two homologous intron-encoded proteins from yeast mitochondria. Cell 56:431-441 Dorner S, Polacek N, Schulmeister U, Panuschka C, Barta A (2002) Molecular aspects of the ribosomal peptidyl transferase. Biochem Soc Trans 30:1131-1136 Dujardin G, Jacq C, Slonimski PP (1982) Single base substitution in an intron of oxidase gene compensates splicing defects of the cytochrome b gene. Nature 298:628-632 Dujon B (1979) Mutants in a mosaic gene reveal function for introns. Nature 282:777-778 Dujon B (1980) Sequence of the intron and flanking exons of the mitochondrial 21S rRNA

gene of yeast strains having different alleles at the w and RIB 1 loci. Cell 20:185-197 Dujon B (1981) Mitochondrial genetics and Functions. In: Strathern JN, Jones JR, Broach EW (eds) Molecular biology of the yeast Saccharomyces: life cycle and inheritance. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, pp 505-635 Dujon B (1989) Group I introns as mobile genetic elements: facts and mechanistic speculations - a review. Gene 82:91-114

Dujon B, Jacquier A (1983) Organization of the mitochondrial 21S rRNA gene in Saccharo-myces cerevisiae: mutants of the peptidyl transferase centre and nature of the w locus. In: Schweyen RJ, Wolf K, Kaudewitz F (eds) Mitochondria 1983. De Gruyter, Berlin, pp 389-403

Dujon B,Slonimski PP (1976) Mechanisms and rules for transmission, recombination and segregation of mitochondrial genes in Saccharomyces cerevisiae. In: Bücher T, Neupert W, Sebald W, Werner S (eds) Genetics and biogenesis of chloroplasts and mitochondria. Elsevier North Holland Biomed Press, Amsterdam, pp 393-403 Dujon B, Slonimski PP, Weill L (1974) Mitochondrial genetics. IX. A model for recombination and segregation of mitochondrial genomes in Saccharomyces cerevisiae. Genetics 78:415-437

Dujon B, Kruszewska A, Slonimski PP, Bolotin-Fukuhara M, Coen D, Deutsch J, Netter P, Weill L (1975) Mitochondrial genetics. X. Effects of UV irradiation on transmission and recombination of mitochondrial genes in Saccharomyces cerevisiae. Mol Gen Genet 137:29-72

Dujon B, Bolotin-Fukuhara M, Coen D, Deutsch J, Netter P, Slonimski PP, Weill L (1976) Mitochondrial genetics. XI. Mutations at the mitochondrial locus w affecting the recombination of mitochondrial genes in Saccharomyces cerevisiae. Mol Gen Genet 143:131-165

Dujon B, Cottarel G, Colleaux L, Betermier M, Jacquier A, d'Auriol L, Galibert F (1985) Mechanism of integration of an intron within a mitochondrial gene: a double strand break and the transposase function of an intron encoded protein as revealed by in vivo and in vitro assays. In: Quagliariello E, Slater EC, Palmieri F et al. (eds) Achievements and perspectives of mitochondrial research, vol II. Biogenesis. Elsevier, Amsterdam, pp 215-225

Dujon B, Colleaux L, Jacquier A, Michel F, Monteilhet C (1986) Mitochondrial introns as mobile genetic elements: the role of intron-encoded proteins. In: Wickner R, Hinnebusch A, et al (eds) Extrachromosomal elements in lower eucaryotes. Plenum, New York, pp 5-27

Dujon B, Beifort M, Butow RA, Jacq C, Lemieux C, Perlman PS, Vogt VM (1989) Mobile introns: definition of terms and recommended nomenclature. Gene 82:115-118 Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I et al (2004) Genome evolution in yeast. Nature 430:35-44 Fairhead C, Dujon B (1993) Consequences of a unique double strand break in yeast chromosomes: death or homozygosis. Mol Gen Genet 240:170-180 Fairhead C, Heard E, Arnaud D, Avner P, Dujon B (1995) Insertion of unique sites into YAC arms for rapid physical analysis following YAC transfer into mammalian cells. Nucleic Acids Res 23:4011-4012 Fairhead C, Llorente B, Denis F, Soler M, Dujon B (1996) New vectors for combinatorial deletions in yeast chromosomes and for gap-repair cloning using "split-marker" recombination. Yeast 12:1439-1457 Fairhead C, Thierry A, Denis F, Eck M, Dujon B (1998) Mass-murder of ORFs from three regions of chromosome XI from S. cerevisiae. Gene 223:33-46 Faye G, Dennebouy N, Kujawa C, Jacq C (1979) Inserted sequence in the mitochondrial 23S ribosomal RNA gene of the yeast Saccharomyces cerevisiae. Mol Gen Genet 168:101109

Haugen P, Bhattacharaya D (2004) The spread of LAGLIDADG homing endonuclease genes in rDNA. Nucleic Acids Res 32:2049-2057 Hensgens LAM, Bönen L, de Haan M, van der Horts G, Grivell LA (1983) Two intron sequences in yeast mitochondrial COXI gene: homology among URF-containing introns and strain-dependent variation in flanking exons. Cell 32:379-389

Jacq C, Lazowska J, Slonimski PP (1980) Sur un nouveau mécanisme de la régulation de l'expression génétique. CR Acad Sei Paris 290:1-4 Jacquier A, Dujon B (1983) The intron of the mitochondrial 21S rRNA: distribution in different yeast species and sequence comparison between Kluyveromyces thermotolerans and Saccharomyces cerevisiae. Mol Gen Genet 192:487-499 Jacquier A, Dujon B (1985) An intron encoded protein is active in a gene conversion process that spreads an intron into a mitochondrial gene. Cell 41:383-394 Kostriken R, Heffron F (1984) The product of the HO gene is a nuclease: purification and characterization of the enzyme. Cold Spring Harbor Symp Quant Biol 49:89-97 Kruger K, Grabowski PJ, Zaug AJ, Sands J, Gottschling DE, Cech TR (1982) Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena. Cell 31:147-157 Lambowitz AM, Perlman PS (1990) Involvement of aminoacyl-tRNA synthethases and other proteins in group I and group II intron splicing. Trends Biochem Sei 15:440-444 Lazowska J, Jacq C, Slonsimski PP (1980) Sequence of introns and flanking exons in wildtype and box3 mutants of cytochrome b reveals an interlaced splicing protein coded by an intron. Cell 22:333-348 Lemieux C, Lee RW (1987) Non-reciprocal recombination between alleles of the chloro-plast 23S rRNA gene in interspecific Chlamydomonas crosses. Proc Natl Acad Sei USA 84:4166-4170

Macreadie IG, Scott RM, Zinn AR, Butow RA (1985) Transposition of an intron in yeast mitochondria requires a protein encoded by that intron. Cell 41:395-402 Macino G, Coruzzi G, Nobrega FG, Li M, Tzagoloff A (1979) Use of the UGA terminator as a tryptophan codon in yeast mitochondria. Proc Natl Acad Sei USA 76:3784-3785 Marshall P, Lemieux C (1992) The l-Ceu I endonuclease recognizes a sequence of 19 base pairs and preferentially cleaves the coding strand of the Chlamydomonas moewusii chloroplast large subunit rRNA gene. Nucleic Acids Res 20:6401-6407 Meselson MS, Radding CM (1975) A general model for genetic recombination. Proc Natl

Acad Sei USA 72:358-361 Michel F, Dujon B (1983) Conservation of RNA secondary structures in two intron families including mitochondrial-, chloroplast- and nuclear-encoded members. EMBO J 2:33-38

Michel F, Jacquier A, Dujon B (1982) Comparison of fungal mitochondrial introns reveals extensive homologies in RNA secondary structure. Biochimie 64:867-881 Monteilhet C, Perrin A, Thierry A, Colleaux L, Dujon B (1990) Purification and characterization of the in vitro activity of I-Scel, a novel and highly specific endonuclease encoded by a group I intron. Nucleic Acids Res 18:1407-1413 Moure CM, Gimble FS, Quiocho FA (2003) The crystal structure of the gene targeting homing endonuclease I-Scel reveals the origins of its target site specificity. J Mol Biol 334:685-695

Muscarella DE, Vogt VM (1989) A mobile group I intron in the nuclaer rDNA of Physarum polycephalum. Cell 56:443-454 Muscarella DE, Ellison EL, Ruoff BM, Vogt VM (1990) Characterization of I-Ppo, an intron-encoded endonuclease that mediates homing of a group I intron in the ribosomal DNA of Physarum polycephalum. Mol Cell Biol 10:3386-3396 Netter P, Petrochilo E, Slonimski PP, Bolotin-Fukuhara M, Coen D, Deutsch J, Dujon B (1974) Mitochondrial genetics. VII. Allelism and mapping studies of ribosomal mutants resistant to chloramphenicol, erythromycin and spiramycin in S. cerevisiae. Genetics 78:1063-1100

Pedersen-Lane J, Beifort M (1987) Variable occurrence of the nrdB intron in T-even phages suggests intron mobility. Science 237:182-184

Pellenz S, Harington A, Dujon B, Wolf K, Schäfer B (2002) Characterization of the I-Sporn I endonuclease from fission yeast: insights into the evolution of a group I intron-encoded homing endonuclease. J Mol Evol 55:302-313 Perrin A, Buckle M, Dujon B (1993) Asymmetrical recognition and activity of the I-Scel endonuclease on its site and on intron-exon junctions. EMBO J 12:2939-2947 Plessis A, Perrin A, Haber JE, Dujon B (1992) Site-specific recombination determined by I-Scel, a mitochondrial group I intron-encoded endonuclease expressed in the yeast nucleus. Genetics 130:451-460 Puchta H, Dujon B, Hohn B (1993) Homologous recombination in plant cells is enhanced by in vivo induction of double strand breaks into DNA by a site-specific endonuclease. Nucleic Acids Res 21:5034-5040 Puchta H, Dujon B,Hohn B (1996) Two different but related mechanisms are used in plants for the repair of genomic double-strand breaks by homologous recombination. Proc Natl Acad Sei USA 93:5055-5060 Quirk SM, Bell-Pedersen D, Beifort M (1989) Intron mobility in the T-even phages: high frequency inheritance of group I introns promoted by intron open reading frames. Cell 56:455-465

Ricchetti M, Fairhead C, Dujon B (1999) Mitochondrial DNA repairs double strand breaks in yeast chromosomes. Nature 402:96-100 Ricchetti M, Dujon B, Fairhead C (2003) Distance from the chromosome end determines the efficiency of double strand break repair in subtelomeres of haploid yeast. J Mol Biol 328:847-862

Richard G-F, Dujon B, Haber J (1999) Double-strand break repair can lead to high frequencies of deletions within short CAG/GTG trinucleotide repeats. Mol Gen Genet 261:871-882

Richard G-F, Cyncynatus C, Dujon B (2003) Contractions and expansions of CAG/CTG trinucleotide repeats occur during ectopic conversion in yeast, by a MUS81-independent mechanism. J Mol Biol 326:769-782 Rougeulle C, Colleaux L, Dujon B, Avner P (1994) Generation and characterization of an ordered lambda clone array for the 460 kb region surrounding the murine Xist sequence. Mammal Genome 5:416-423 Seraphin B, Faye G, Hatat D, Jacq C (1992) The yeast mitochondrial intron ai5alpha: associated endonuclease activity and in vivo mobility. Gene 113:1-8 Schapira M, Desdouets C, Jacq C, Perea J (1993) I-SceIII an intron-encoded DNA endonu-cleases from yeast mitochondria. Asymmetrical DNA binding properties and cleavage reaction. Nucleic Acids Res 21:3683 Slonimski PP, Tzagoloff A (1976) Localization in yeast mitochondrial DNA of mutations expressed in a deficiency of cytochrome oxidase and/or coenzyme QH2-cytochrome c reductase. Eur J Biochem 61:27-41 Slonimski PP, Claisse ML, Foucher M, Jacq C, Kochko A, Lamouroux A, Pajot P, Perrodin G, Spyridakis A, Wambier-Kluppel ML (1978) Mosaic organization and expression of the mitochondrial DNA region controlling cytochrome c reductase and oxidase. III. A model of structure and function. In: Bacila M (ed) Biochemistry and genetics of yeasts: pure and applied aspects. Academic Press, New York, pp 391-401 Sor F, Fukuhara H (1982) Identification of two erythromycin resistance mutations in the mitochondrial gene coding for the large ribosomal RNA in yeast. Nucleic Acids Res 10:6571-6577

Strathern JN, Klar AJ, Hicks JB, Abraham JA, Ivy JM, Nasmyth KA, McGill C (1982) Homothallic switching of yeast mating type cassettes is initiated by a double-strand cut in the MAT locus. Cell 31:183-192

Subik J, Kovacova V, Takacsova G (1977) Mucidin resistance in yeast: isolation, characterization and genetic analysis of nuclear and mitochondrial mucidin-resistant mutants of Saccharomyces cerevisiae. Eur J Biochem 73:275-286 Tabak HF, van der Horst G, Osinga KA, Arnberg AC (1984) Splicing of large ribosomal precursor RNA and processing of intron RNA in yeast mitochondria. Cell 39:623-629 Tettelin H, Thierry A, Fairhead C, Perrin A, Dujon B (1995) In vitro fragmentation of yeast chromosomes and yeast artificial chromosomes at artificially inserted sites and applications to genome mapping. Methods Mol Genet Microb Gene Technol 6:81-107 Tettelin H, Thierry A, Goffeau A, Dujon B (1998) Physical mapping of chromosomes VII and XV of Saccharomyces cerevisiae at 3.5 kb average resolution to allow their complete sequencing. Yeast 14:601-616 Thierry A, Dujon B (1992) Nested chromosomal fragmentation in yeast using the meganu-clease I-Scel: a new method for physical mapping of eukaryotic genomes. Nucleic Acids Res 20:5625-5631

Thierry A, Perrin A, Boyer J, Fairhead C, Dujon B, Frey B, Schmitz G (1991) Cleavage of yeast and bacteriophage T7 genomes at a single site using the rare cutter endonuclease I-Scel. Nucleic Acids Res 19:189-190 Thierry A, Gaillon L, Galibert F, Dujon B (1995) Construction of a complete genomic library of Saccharomyces cerevisiae and physical mapping of chromosome XI at 3.7 kb resolution. Yeast 11:121-135 Wenzlau JM, Saldanha RJ, Butow RA, Perlman PS (1989) A latent intron-encoded maturase is also an endonuclease needed for intron mobility. Cell 56:421-430 Wolf K, Dujon B, Slonimski PP (1973) Mitochondrial genetics. V. Multifactorial mitochondrial crosses involving a mutation conferring paromomycin-resistance in S. cerevisiae. Mol Gen Genet 125:53-90 Zinn AR, Butow RA (1985) Nonreciprocal exchange between alleles of the yeast mitochondrial 21S rRNA gene: kinetics and the involvement of a double-strand break. Cell 40:887-895

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