Among the software packages available for constructing and solving ordinary differential equation models, good examples are the following which are also straightforward to use:
Berkeley Madonna, http://www.berkeleymadonna.com/ Robert I. Macey and George F. Oster
ModelMaker, http://www.modelkinetix.com/ FamilyGenetix Ltd
Stella, ISEE Systems, http://www.iseesystems.com/ Inc
Flow diagrams can also be designed with these packages and then automatically transformed into systems of ODEs.
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