Aruscavage PJ, Bass BL (2000) A phylogenetic analysis reveals an unusual sequence conservation within introns involved in RNA editing. RNA 6:257-269 Bass BL (2002) RNA editing by adenosine deaminases that act on RNA. Annu Rev Biochem 71:817-846

Bass BL, Weintraub H (1987) A developmentally regulated activity that unwinds RNA

duplexes. Cell 48:607-613 Bass BL, Weintraub H (1988) An unwinding activity that covalently modifies its double-

stranded RNA substrate. Cell 55:1089-1098 Benne R, Van den Burg J, Brakenhoff JP, Sloof P, Van Boom JH, Tromp MC (1986) Major transcript of the frameshifted coxII gene from trypanosome mitochondria contains four nucleotides that are not encoded in the DNA. Cell 46:819-826 Bergmann KF, Gerin JL (1986) Antigens of hepatitis delta virus in the liver and serum of humans and animals. J Infect Dis 154:702-706 Bonino F, Heermann KH, Rizzetto M, Gerlich WH (1986) Hepatitis delta virus: protein composition of delta antigen and its hepatitis B virus-derived envelope. J Virol 58:945-950

Bonino F, Hoyer B, Ford E, Shih JW, Purcell RH, Gerin JL (1981) The delta agent: HBsAg particles with delta antigen and RNA in the serum of an HBV carrier. Hepatology 1:127-131

Bonino F, Hoyer B, Shih JW, Rizzetto M, Purcell RH, Gerin JL (1984) Delta hepatitis agent: structural and antigenic properties of the delta- associated particle. Infect Immun 43:1000-1005 Brusa R, Zimmermann F, Koh DS, Feldmeyer D, Gass P, Seeburg PH, Sprengel R (1995) Early-onset epilepsy and postnatal lethality associated with an editing- deficient GluR-B allele in mice. Science 270:1677-1680 Casey JL (2002) RNA Editingin Hepatitis Delta Virus Genotype III Requires a Branched

Double-Hairpin RNA Structure. J Virol 76:7385-7397 Casey JL, Bergmann KF, Brown TL, Gerin JL (1992) Structural requirements for RNA editing in hepatitis delta virus: evidence for a uridine-to-cytidine editing mechanism. Proc Natl Acad Sci USA 89:7149-7153 Casey JL, Brown TL, Colan EJ, Wignall FS, Gerin JL (1993) A genotype of hepatitis D virus that occurs in northern South America. Proc Natl Acad Sci USA 90:90169020

Casey JL, Gerin JL (1995) Hepatitis D virus RNA editing: specific modification of adenosine in the antigenomic RNA. J Virol 69:7593-7600 Chang FL, Chen PJ, Tu SJ, Wang CJ, Chen DS (1991) The large form of hepatitis delta antigen is crucial for assembly of hepatitis delta virus. Proc Natl Acad Sci USA 88:8490-8494

Chang MF, Baker SC, Soe LH, Kamahora T, Keck JG, Makino S, Govindarajan S, Lai MM (1988) Human hepatitis delta antigen is a nuclear phosphoprotein with RNA- binding activity. J Virol 62:2403-2410 Chao M, Hsieh SY, Taylor J (1990) Role of two forms of hepatitis delta virus antigen: evidence for a mechanism of self-limiting genome replication. J Virol 64:50665069

Cheng Q, Jayan GC, Casey JL (2003) Differential inhibition of RNA editing in hepatitis delta virus genotype III by the short and long forms of hepatitis delta antigen. J Virol 77:7786-7795

Curran J, Kolakofsky D (1990) Sendai virus P gene produces multiple proteins from overlapping open reading frames. Enzyme 44:244-249 Glenn JS, Watson JA, Havel CM, White JM (1992) Identification of a prenylation site in delta virus large antigen. Science 256:1331-1333 Glenn JS, White JM (1991) trans-dominant inhibition of human hepatitis delta virus genome replication. J Virol 65:2357-2361 Gott JM, Emeson RB (2000) Functions and mechanisms of RNA editing. Annu Rev Genet 34:499-531

Hartwig D, Schoeneich L, Greeve J, Schutte C, Dorn I, Kirchner H, Hennig H (2004) Interferon-alpha stimulation of liver cells enhances hepatitis delta virus RNA editing in early infection. J Hepatol 41:667-672 Herb A, Higuchi M, Sprengel R, Seeburg PH (1996) Q/R site editing in kainate receptor GluR5 and GluR6 pre-mRNAs requires distant intronic sequences. Proc Natl Acad Sci USA 93:1875-1880 Herbert A, Rich A (2001) The role of binding domains for dsRNA and Z-DNA in the in vivo editing of minimal substrates by ADAR1. Proc Natl Acad Sci USA 98:12132-12137

Higuchi M, Single FN, Kohler M, Sommer B, Sprengel R, Seeburg PH (1993) RNA editing of AMPA receptor subunit GluR-B: a base-paired intron-exon structure determines position and efficiency. Cell 75:1361-1370 Hsu SC, Syu WJ, Sheen IJ, Liu HT, Jeng KS, Wu JC (2002) Varied assembly and RNA editing efficiencies between genotypes I and II hepatitis D virus and their implications. Hepatology 35:665-672 Hwang SB, Lee CZ, Lai MM (1992) Hepatitis delta antigen expressed by recombinant baculoviruses: comparison of biochemical properties and post-translational modifications between the large and small forms. Virology 190:413-422 Ilan Y, Klein A, Taylor J, Tur-Kaspa R (1992) Resistance of hepatitis delta virus replication to interferon-alpha treatment in transfected human cells. J Infect Dis 166:1164-1166

Ivaniushina V, Radjef N, Alexeeva M, Gault E, Semenov S, Salhi M, Kiselev O, Deny P (2001) Hepatitis delta virus genotypes I and II cocirculate in an endemic area of Yakutia, Russia. J Gen Virol 82:2709-2718 Jayan GC, Casey JL (2002a) Increased RNA editing and inhibition of hepatitis delta virus replication by high-level expression of ADAR1 and ADAR2. J Virol 76:38193827

Jayan GC, Casey JL (2002b) Inhibition of hepatitis delta virus RNA editing by short inhibitory RNA-mediated knockdown of Adar1 but not Adar2 expression. J Virol 76:12399-12404

Jayan GC, Casey JL (2005) Effects of conserved RNA secondary structures on hepatitis delta virus genotype I RNA editing, replication, and virus production. J Virol 79:11187-11193

Kuo MY, Chao M, Taylor J (1989) Initiation of replication of the human hepatitis delta virus genome from cloned DNA: role of delta antigen. J Virol 63:1945-1950

Lehmann KA, Bass BL (1999) The importance of internal loops within RNA substrates of ADAR1. J Mol Biol 291:1-13 Liu Y, Herbert A, Rich A, Samuel CE (1998) Double-stranded RNA-specific adenosine deaminase: nucleic acid binding properties. Methods 15:199-205 Liu Y, Samuel CE (1996) Mechanism of interferon action: functionally distinct RNA-binding and catalytic domains in the interferon-inducible, double-stranded RNA-specific adenosine deaminase. J Virol 70:1961-1968 Lomeli H , Mosbacher J, Melcher T, Hoger T, Geiger JR , Kuner T, Monyer H , Higuchi M , Bach A, Seeburg PH (1994) Control of kinetic properties of AMPA receptor channels by nuclear RNA editing. Science 266:1709-1713 Luo GX, Chao M, Hsieh SY, Sureau C, Nishikura K, Taylor J (1990) A specific base transition occurs on replicating hepatitis delta virus RNA. J Virol 64:1021-1027 Macnaughton TB, Lai MM (2002) Large hepatitis delta antigen is not a suppressor of hepatitis delta virus RNA synthesis once RNA replication is established. J Virol 76:9910-9919

Makino S, Chang MF, Shieh CK, Kamahora T, Vannier DM, Govindarajan S, Lai MM (1987) Molecular cloning and sequencing of a human hepatitis delta virus RNA. Nature 329:343-346

McNair AN, Cheng D, Monjardino J, Thomas HC, Kerr IM (1994) Hepatitis delta virus replication in vitro is not affected by interferon-alpha or -gamma despite intact cellular responses to interferon and dsRNA. J Gen Virol 75:1371-1378 Melcher T, Maas S, Herb A, Sprengel R, Seeburg PH, Higuchi M (1996) A mammalian

RNA editing enzyme. Nature 379:460-464 Modahl LE, Lai MM (2000) The large delta antigen of hepatitis delta virus potently inhibits genomic but not antigenomic RNA synthesis: a mechanism enabling initiation of viral replication. J Virol 74:7375-7380 Niro GA, Smedile A, Andriulli A, Rizzetto M, Gerin JL, Casey JL (1997) The predominance of hepatitis delta virus genotype I among chronically infected Italian patients. Hepatology 25:728-734 O'Connell MA, Krause S, Higuchi M, Hsuan JJ, Totty NF, Jenny A, Keller W (1995) Cloning of cDNAs encoding mammalian double-stranded RNA-specific adenosine deaminase. Mol Cell Biol 15:1389-1397 Ohman M, Kallman AM, Bass BL (2000) In vitro analysis of the binding of ADAR2 to the pre-mRNA encoding the GluR-B R/G site. RNA 6:687-697 Patterson JB, Samuel CE (1995) Expression and regulation by interferon of a double-stranded-RNA-specific adenosine deaminase from human cells: evidence for two forms of the deaminase. Mol Cell Biol 15:5376-5388 Paul MS, Bass BL (1998) Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA. EMBOJ 17:1120-1127 Polson AG, Bass BL (1994) Preferential selection of adenosines for modification by double-stranded RNA adenosine deaminase. EMBO J 13:5701-5711 Polson AG, Bass BL, Casey JL (1996) RNA editing of hepatitis delta virus antigenome by dsRNA-adenosine deaminase. Nature 380:454-456 Polson AG, Ley HL, 3rd, Bass BL, Casey JL (1998) Hepatitis delta virus RNA editing is highly specific for the amber/W site and is suppressed by hepatitis delta antigen. Mol Cell Biol 18:1919-1926

Radjef N, Gordien E, Ivaniushina V, Gault E, Anais P, Drugan T, Trinchet JC, Roulot D, Tamby M, Milinkovitch MC and others (2004) Molecular phylogenetic analyses indicate a wide and ancient radiation of African hepatitis delta virus, suggesting a deltavirus genus of at least seven major clades. J Virol 78:2537-2544 Ryu WS, Bayer M, Taylor J (1992) Assembly of hepatitis delta virus particles. J Virol 66:2310-2315

Sato S, Cornillez-Ty C, Lazinski DW (2004) By inhibiting replication, the large hepatitis delta antigen can indirectly regulate amber/W editing and its own expression. J Virol 78:8120-8134

Sato S, Wong SK, Lazinski DW (2001) Hepatitis delta virus minimal substrates competent for editing by adar1 and adar2. J Virol 75:8547-8555 Scott J (1989) Messenger RNA editing and modification. Curr Opin Cell Biol 1:11411147

Seeburg PH (2002) A-to-I editing: new and old sites, functions and speculations. Neuron 35:17-20

Seeburg PH, Higuchi M, Sprengel R (1998) RNA editing of brain glutamate receptor channels: mechanism and physiology. Brain Res Brain Res Rev 26:217-229. Shakil AO, Hadziyannis S, Hoofnagle JH, Di Bisceglie AM, Gerin JL, Casey JL (1997) Geographic distribution and genetic variability of hepatitis delta virus genotype I. Virology 234:160-167 Sureau C, Taylor J, Chao M, Eichberg JW, Lanford RE (1989) Cloned hepatitis delta virus cDNA is infectious in the chimpanzee. J Virol 63:4292-4297 Wagner RW, Smith JE, Cooperman BS, Nishikura K (1989) A double-stranded RNA unwinding activity introduces structural alterations by means of adenosine to inosine conversions in mammalian cells and Xenopus eggs. Proc Natl Acad Sci USA 86:2647-2651

WangJG, Cullen J, Lemon SM (1992) Immunoblot analysis demonstrates that the large and small forms of hepatitis delta virus antigen have different C-terminal amino acid sequences. J Gen Virol 73:183-188 Wang KS, Choo QL, Weiner AJ, Ou JH, Najarian RC, Thayer RM, Mullenbach GT, Denniston KJ, Gerin JL, Houghton M (1986) Structure, sequence and expression of the hepatitis delta viral genome. Nature 323:508-514 Wang Q, Khillan J, Gadue P, Nishikura K (2000) Requirement of the RNA editing deaminase ADAR1 gene for embryonic erythropoiesis. Science 290:1765-1768 Weiner AJ, Choo QL, Wang KS, Govindarajan S, Redeker AG, Gerin JL, Houghton M (1988) A single antigenomic open reading frame of the hepatitis delta virus encodes the epitope(s) of both hepatitis delta antigen polypeptides p24 delta and p27 delta. J Virol 62:594-599 Wong SK, Lazinski DW (2002) Replicating hepatitis delta virus RNA is edited in the nucleus by the small form of ADAR1. Proc Natl Acad Sci USA 99:15118-15123 Wong SK, Sato S, Lazinski DW (2001) Substrate recognition by ADAR1 and ADAR2. RNA 7:846-858

Wu TT, Bichko VV, Ryu WS, Lemon SM, Taylor JM (1995) Hepatitis delta virus mutant:

effect on RNA editing. J Virol 69:7226-7231 Xia YP, Chang MF, Wei D, Govindarajan S, Lai MM (1990) Heterogeneity of hepatitis delta antigen. Virology 178:331-336

Yang A, Papaioannou C, Hadzyannis S, Thomas H, Monjardino J (1995) Base changes at positions 1014 and 578 of delta virus RNA in Greek isolates maintain base pair in rod conformation with efficient RNA editing. J Med Virol 47:113-119 Yang JH, Sklar P, Axel R, Maniatis T (1997) Purification and characterization of ahuman RNA adenosine deaminase for glutamate receptor B pre-mRNA editing. Proc Natl Acad Sci USA 94:4354-4359 Zheng H, Fu TB, Lazinski D, Taylor J (1992) Editing on the genomic RNA of human hepatitis delta virus. J Virol 66:4693-4697

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