Dna

a-Proteobacterium (aerobic)

^ Likewise, endocytosis of a photosynthesizing eubacterium...

| „.led to the evolution of modern eukaryotic cells with mitochondria and chloroplasts.

^ The aerobic endosymbiont evolved into mitochondria.

^ Likewise, endocytosis of a photosynthesizing eubacterium...

| „.led to the evolution of modern eukaryotic cells with mitochondria and chloroplasts.

Present-day animal cell

A 20.7 The endosymbiotic theory proposes that mitochondria and chloroplasts in eukaryotic cells arose from eubacteria. An original ancestral cell gave rise to prokaryotic and eukaryotic cells.

Present-day plant cell

The Endosymbiotic Theory

Chloroplasts and mitochondria are in many ways similar to bacteria. This resemblance is not superficial; indeed there is compelling evidence that these organelles evolved from eubacteria (see p. 000 in Chapter 2). The endosymbiotic theory (IFigure 20.7) proposes that mitochondria and chloroplasts were once free-living bacteria that became internal inhabitants (endosymbionts) of early eukaryotic cells. According to this theory, between 1 billion and 1.5 billion years ago, a large, anaerobic eukaryotic cell engulfed an aerobic eubacterium, one that possessed the enzymes necessary for oxidative phosphorylation. The eubacterium provided the formerly anaerobic cell with the capacity for oxidative phosphorylation and allowed it to produce more ATP for each organic molecule digested. With time, the endosymbiont became an integral part of the eukaryotic host cell, and its descendants evolved into present-day mitochondria. Sometime later, a similar relation arose between photosynthesizing eubacteria and eukaryotic cells, leading to the evolution of chloroplasts.

A great deal of evidence supports the idea that mitochondria and chloroplasts originated as eubacterial cells. Many modern, single-celled eukaryotes (protists) are hosts to endosymbiotic bacteria. Mitochondria and chloroplasts are similar in size to present-day eubacteria and possess their own DNA, which has many characteristics in common with eubacterial DNA. Mitochondria and chloroplasts possess ribosomes, some of which are similar in size and structure to eubacterial ribosomes. Finally, antibiotics that inhibit protein synthesis in eubacteria but do not affect protein synthesis in eukaryotic cells also inhibit protein synthesis in these organelles.

The strongest evidence for the endosymbiotic theory comes from the study of DNA sequences in organellar DNA. Ribosomal RNA and protein-encoding gene sequences in mitochondria and chloroplasts have been found to be more closely related to sequences in the genes of eubacteria than they are to those found in the eukaryotic nucleus. Mitochon-drial DNA sequences are most similar to sequences found in a group of eubacteria called the a-proteobacteria, suggesting that the original bacterial endosymbiont came from this group. Chloroplast DNA sequences are most closely related to sequences found in cyanobacteria, a group of photosynthe-sizing eubacteria. All of this evidence indicates that mitochondria and chloroplasts are more closely related to eubacterial cells than they are to the eukaryotic cells in which they are now found.

Concepts EH

Mitochondria and chloroplasts are membrane-bounded organelles of eukaryotic cells that generally possess their own DNA. The well-supported endosymbiotic theory proposes that these organelles began as free-living eubacteria that developed stable endosymbiotic relations with early eukaryotic cells.

Mitochondrial DNA

In animals and most fungi, the mitochondrial genome consists of a single, highly coiled, circular DNA molecule Plant mitochondrial genomes often exist as a complex collection of multiple circular DNA molecules. Each mitochondrion

Table 20.1 Sizes of mitochondrial genomes in selected organisms contains multiple copies of the mitochondrial genome, and a cell may contain many mitochondria. A typical rat liver cell, for example, has from 5 to 10 mtDNA molecules in each of about 1000 mitochondria; so each cell possesses from 5000 to 10,000 copies of the mitochondrial genome, and mtDNA constitutes about 1% of the total cellular DNA in a rat liver cell. Like eubacterial chromosomes, mtDNA lacks the histone proteins normally associated with eukary-otic nuclear DNA. The guanine-cytosine (GC) content of mtDNA is often sufficiently different from that of nuclear DNA that mtDNA can be separated from nuclear DNA by density gradient centrifugation.

Mitochondrial genomes are small compared with nuclear genomes and vary greatly in size among different organisms (Table 20.1). Most of this size variation is in non-coding sequences such as introns and intergenic regions.

Gene Structure and Organization of mtDNA

The nucleotide sequence of the mitochondrial genome has been determined for a variety of different organisms, including protists, fungi, plants, and animals. The genes for many of the structural proteins and enzymes found in mitochon dria are actually encoded by nuclear DNA, translated on cytoplasmic ribosomes, and then transported into the mitochondria; the mitochondrial genome typically encodes only a few rRNA and tRNA molecules needed for mitochondrial protein synthesis. The organization of these mitochondrial genes and how they are expressed is extremely diverse across organisms.

Ancestral and derived mitochondrial genomes Mitochondrial genomes can be divided in two basic types—ancestral genomes and derived genomes—although there is much variation within each type and the mtDNA of some organisms does not fit well into either category. Ancestral mito-chondrial genomes are found in some plants and protists and retain many characteristics of their eubacterial ancestors. These mitochondrial genomes contain more genes than do derived genomes, have rRNA genes that encode eubacterial-like ribosomes, and have a complete or almost complete set of tRNA genes. They possess few introns and little noncoding DNA between genes, generally use universal codons, and have their genes organized into clusters similar to those found in eubacteria.

Derived mitochondrial genomes, in contrast, are usually smaller than ancestral genomes and contain fewer genes. Their rRNA genes and ribosomes differ substantially from those found in typical eubacteria. The DNA sequences found in derived mitochondrial genomes differ more from typical eubacterial sequences than do ancestral genomes, and they contain nonuniversal codons. Most animal and fungal mitochondrial genomes fit into this category.

Human mtDNA Human mtDNA is a circular molecule encompassing 16,569 bp that encode two rRNAs, 22 tRNAs, and 13 proteins. The two nucleotide strands of the molecule differ in their base composition: the heavy (H) strand has more guanine nucleotides, whereas the light (L) strand has more cytosine nucleotides. The H strand is the template for both rRNAs, 14 of the 22 tRNAs, and 12 of the 13 proteins, whereas the L strand serves as template for only 8 of the tRNAs and one protein.

The origin of replication for the H strand is within a region known as the D loop (IFigure 20.8), which also contains promoters for both the H and L strands. Human mtDNA is highly economical in its organization: there are few noncoding nucleotides between the genes; almost all the mRNA is translated (there are no 5' and 3' untranslated regions); and there are no introns. Each strand has only a single promoter; so transcription produces two very large RNA precursors that are later cleaved into individual RNA molecules. Many of the genes that encode polypeptides even lack a complete termination codon, ending in either U or UA; the addition of a poly(A) tail to the 3' end of the mRNA provides a UAA termination codon that halts translation. Human mtDNA also contains very little repetitive DNA. The one region of the human mtDNA that does contain some noncoding nucleotides is the D loop.

Size of mtDNA in Nucleotide

Organism Pairs

Ascaris summ (nematode worm) 14,284

Drosophila melanogaster (fruit fly) 19,517

Lumbricus terrestis (earthworm) 14,998

Xenopus laevis (frog) 17,553

Mus musculus (house mouse) 16,295

Canis familiaris (dog) 16,728

Homo sapiens (human) 16,569

Pichia canadensis (fungus) 27,694

Podospora anserina (fungus) 100,314

Schizosaccharomyces pome (fungus) 19,431

Saccharomyces cerevisiae (fungus) 85,779

Chlamydomonas reinhardtii 15,758 (green alga)

Paramecium aurelia (protist) 40,469

Reclinomonas americana (protist) 69,034

Arabidopsis thaliana (plant) 166,924

Brassica hirta (plant) 208,000

Cucumis melo (plant) 2,400,000

Large ribosomal

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